Co-folding Tools

Date	Name	Title	Target	Code
08-Apr-26	Protenix-v2	Protenix-v2: Broadening the Reach of Structure Prediction and Biomolecular Design	all atoms	Link
30-Dec-25	SeedFold	SeedFold: Scaling Biomolecular Structure Prediction	all atoms	Link
18-Jun-25	Boltz-2	Boltz-2: Towards Accurate and Efficient Binding Affinity Prediction	all atoms	Link
11-Jan-25	Protenix	Protenix - Advancing Structure Prediction Through a Comprehensive AlphaFold3 Reproduction	all atoms	Link
27-Dec-24	Boltz-1	Boltz-1: Democratizing Biomolecular Interaction Modeling	all atoms	Link
15-Oct-24	Chai	Chai-1: Decoding the molecular interactions of life	all atoms	Link
30-Aug-24	HelixFold3	Technical Report of HelixFold3 for Biomolecular Structure Prediction	all atoms	Link
28-May-24	Umol	Structure prediction of protein-ligand complexes from sequence information with Umol	protein-small mol	Link
08-May-24	AlphaFold3	Accurate structure prediction of biomolecular interactions with AlphaFold 3	all atoms	Link
07-Mar-24	RosettaFold-AA	Generalized biomolecular modeling and design with RoseTTAFold All-Atom	all atoms	Link
12-Feb-24	NeuralPLexer	State-specific protein–ligand complex structure prediction with a multiscale deep generative model	protein-small mol	Link
18-Jun-25	Boltz-2	Boltz-2: Towards Accurate and Efficient Binding Affinity Prediction	all atoms	Link